Bow in is most common.
And if you want a
place, go to Sandhamn. But the price
for moring(and everything else) is quite expencive. But you can stop at the north island (Lökholmen). Or just drop the anchor their. And take the dingy over...few hundreds meter.
Utö is also a popular place. And if you want to be alone, dont go to Sandhamn, Möja, Utö, Finnhamn. Waxholm is a beautiful place, but the harbour is small and it is a touristplace....
When you stop the first night IN the archipelag, just ask for advice.