Old
fuel will burn w/o hurting the
engine. It won't have as much
power and may not start a cold
engine. Filters probably won't change the color unless they're extremely fine.
Add a high quality fuel conditioner. That will increase the cetane rating, improve combustion efficiency, add lubricity, clean the fuel system, and help a
Racor type filter remove
water. Because it improves combustion, it will also remove soot from the turbo and increase mileage. I would use a 2x or 3x dose. Ant then it should start and run like normal fuel.
I use a fuel conditioner every fueling and the mileage difference pays for the conditioner. I get mine here: archoil.com or from Amazon.