You should be able to use your pump/actuator with just about any
autopilot, so long as the controller output can supply the power needed by the
motor.
Even if the controller can't handle the
motor requirements, there are motor drivers available. see
http://www.comnavmarine.com/ and go to "support" and "manuals" and look at the motor controller documents.
However, most autopilot controllers should be able to handle your motor.