A couple of years ago, I replaced all of my potable
plumbing. I was very much on the side of using PEX but I went with High quality hose from Trident. My reasoning was quite simple: If my old system (hose) lasted for 30+ years, then replacing it with similar will last longer than I will likely own the boat. Another reason was the ease of
repairs to the hose with no special tools required plus the added benefit of ease of disassembly. The hosing, as a system, is a lot cheaper than the special fittings that the PEX requires when you add it all up.
The downside to using hosing is the possibility of algae, but I usually sterilize my lines at least once a year and I also keep a touch of bleach in my
water, so I really haven't noticed any build up.
Oh, this may or may not be an issue: the hosing is easier to snake through the boat.
Just my view and my reasoning